Skill collection · K-Dense-AI
claude-scientific-skills agent skills by K-Dense-AI
177 skills from K-Dense-AI/claude-scientific-skills are listed in the directory, across 10 categories. 12 skills have a full page with install steps and a pre-install summary.
View K-Dense-AI/claude-scientific-skills on GitHub
At a glance
| Publisher | K-Dense-AI |
|---|---|
| Repository | github.com/K-Dense-AI/claude-scientific-skills |
| Listed skills | 177 |
| Security scan | Not scanned |
| Categories | Science and Research, AI Agents and LLM Engineering, Data, Analytics and Databases, Business, Sales and Finance, Documents and Office Files, Developer Tools and Frameworks, Video, Image, Audio and Creative, Productivity and Knowledge Work, Writing and Editing, DevOps and Cloud |
| License | MIT (128), Apache-2.0 (20), BSD-3-Clause (18), CC-BY-4.0 (2), Biopython License Agreement (1), BSD (1), BSD-2-Clause (1), CC-BY-NC-SA-4.0 (1), GPL-2.0 (1), GPL-3.0 (1), GPL-3.0-or-later (1), PolyForm-Noncommercial-1.0.0 (1), Proprietary (1) |
| Last commit | October 12, 2026 |
| README badge | Get the badge for this listing |
Show the listing in your README
This general badge links to the repository listing. For the two quality badges and feature offer, choose Get badges beside a skill below. Each skill keeps its own score and grade.
Markdown
[](https://skills.suedeai.ai/directory/k-dense-ai/claude-scientific-skills/)HTML
<a href="https://skills.suedeai.ai/directory/k-dense-ai/claude-scientific-skills/"><img src="https://skills.suedeai.ai/directory/k-dense-ai/claude-scientific-skills/badge.svg" alt="Suede Skills Directory: listed" height="20"></a>Limited-time feature offer: display either the numeric or letter badge in your repository or skill README (both also qualify), then request badge verification. Eligible skills scoring 80–99 can receive a featured placement after Suede verifies at least one valid badge linked to the skill’s listing. Suede has not announced an end date.
Skills in K-Dense-AI/claude-scientific-skills
Linked names open the skill's directory page; the rest open the skill folder on GitHub. Descriptions on rows without a page are quoted from each SKILL.md.
No matching skills. Try fewer words or clear your search.
| Skill | Category | What it does |
|---|---|---|
| analytical-method-validation 88/100 · B | Science MIT | Plans, executes, and documents validation, verification, and transfer of analytical procedures under frameworks such as ICH Q2(R2), USP, and ISO/IEC 17025. |
| citation-management 89/100 · B | Science MIT | Manages academic citations by searching OpenAlex, PubMed, and Google Scholar, extracting metadata, validating references, and generating formatted BibTeX entries. |
| iso-standards-readiness 91/100 · A | Business MIT | Prepares and structurally reviews readiness evidence for ISO 13485, ISO 14971, ISO/IEC 17025, and ISO 15189 standards, covering scope, controlled documents, and risk files. |
| lab-hardware-cad 86/100 · B | Science MIT | Designs custom laboratory hardware as parametric build123d models and exports STEP, STL, and DXF files for fabrication. |
| literature-review 89/100 · B | Science MIT | Conducts systematic, scoping, and narrative literature reviews using sources such as PubMed, arXiv, and bioRxiv, tracking search coverage and evidence limitations. |
| neuropixels-analysis 87/100 · B | Science MIT | Analyzes Neuropixels extracellular recordings with SpikeInterface, covering data loading, preprocessing, drift correction, Kilosort4 spike sorting, quality metrics, and unit curation. |
| onekgpd 87/100 · B | Science MIT | Queries the 1000 Genomes Project dataset to find which individuals carry specific variants, return variants with allele frequencies, and check relatedness between individuals. |
| pkpd-modeling 88/100 · B | Science MIT | Supports pharmacokinetic and pharmacodynamic modelling and simulation, including non-compartmental analysis, population PK, exposure-response, bioequivalence, and dosing regimen evaluation from concentration-time data. |
| primer-design 87/100 · B | Science MIT | Designs and audits PCR and RT-qPCR primers with Primer3, including off-target amplification searches, existing primer checks, and in-silico PCR and BLAST screening. |
| relsa-severity-assessment 88/100 · B | Science MIT | Combines welfare readouts from laboratory animal studies into a daily severity score per animal and forecasts which animals may reach a humane endpoint. |
| scientific-writing 87/100 · B | Writing MIT | Drafts, revises, and audits scientific manuscripts or reports with evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks. |
| treatment-plans 91/100 · A | Science MIT | Formats and structurally validates treatment-plan documentation after licensed professionals have supplied and verified clinical decisions, without making clinical decisions itself. |
| 13c-metabolic-flux 87/100 · B | Science MIT | Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| adaptyv 77/100 · C | Science MIT | Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory… |
| aeon 87/100 · B | Science BSD-3-Clause | This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| alphagenome 87/100 · B | Science MIT | Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| anndata 79/100 · C | Science BSD-3-Clause | Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format… |
| arbor 81/100 · B | Science MIT | Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| arboreto 87/100 · B | Science BSD-3-Clause | Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| astropy 85/100 · B | Science BSD-3-Clause | Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| autoskill 89/100 · B | AI agents MIT | Analyzes user-requested Screenpipe history windows to detect repeated research workflows, match existing scientific skills, and stage new skill…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| benchling-integration 87/100 · B | Science MIT | Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| bgpt-paper-search 82/100 · B | Science MIT | Searches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| bids 79/100 · C | Science CC-BY-4.0 | Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI… |
| biopython 79/100 · C | Science Biopython License Agreement | Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access… |
| bioservices 81/100 · B | Science GPL-3.0 | Provides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem. Used for cross-database…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| bulk-rnaseq 87/100 · B | Science MIT | Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| cantera 87/100 · B | Science MIT | Runs Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| cellprofiler 79/100 · C | Science MIT | Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports… |
| cellxgene-census 87/100 · B | Science MIT | Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| cirq 87/100 · B | Science Apache-2.0 | Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| clinical-decision-support 79/100 · C | Science MIT | Prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and… |
| clinical-reports 79/100 · C | Science MIT | Creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research… |
| cobrapy 79/100 · C | Science GPL-2.0 | Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production… |
| consciousness-council 86/100 · B | Productivity MIT | Structures a multi-perspective council exercise for decisions, research trade-offs, and creative challenges. Simulates thinking archetypes…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| dask 87/100 · B | Data BSD-3-Clause | Scales pandas, NumPy, and custom Python research workflows beyond memory or across clusters with Dask. Covers DataFrames, Arrays, Bags, Futures…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| database-lookup 74/100 · C | Data MIT | Queries documented public database APIs with explicit endpoints, filters, pagination, and provenance. Used when a scientific, regulatory, financial… |
| datalad 85/100 · B | Science MIT | Retrieves, versions, and publishes scientific datasets with DataLad and git-annex, and captures computational provenance with datalad run, rerun…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| datamol 79/100 · C | Science Apache-2.0 | Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing… |
| deepchem 81/100 · B | Science MIT | Builds molecular property prediction and MoleculeNet workflows with DeepChem, including SMILES featurization, scaffold or grouped holdouts, masked…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| deepspot-m 79/100 · C | Science PolyForm-Noncommercial-1.0.0 | Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from… |
| deeptools 81/100 · B | Science BSD | NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| depmap 79/100 · C | Science CC-BY-4.0 | Retrieves and analyzes Cancer Dependency Map (DepMap) release data, including CRISPR Chronos gene effects, cancer model annotations, omics… |
| dhdna-profiler 77/100 · C | Writing MIT | Applies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text. Used for explicit requests for DHDNA… |
| diffdock 89/100 · B | Science MIT | Predicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| dnanexus-integration 79/100 · C | Science MIT | Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow… |
| esm 79/100 · C | Science MIT | Uses the Biohub esm Python SDK for ESM3 protein generation, ESMC embeddings, and ESMFold2 all-atom folding. Applies to local model inference and… |
| etetoolkit 81/100 · B | Science GPL-3.0-or-later | Analyzes, manipulates, compares, annotates, and visualizes phylogenetic or other hierarchical trees with ETE 4. Supports Newick/Nexus tree I/O…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| exa-search 79/100 · C | Science MIT | Searches scientific and technical web content with Exa and extracts page or PDF text from URLs in batches. Supports scholarly discovery with the… |
| experimental-design 88/100 · B | Science MIT | Designs experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| exploratory-data-analysis 81/100 · B | Science MIT | Performs bounded, local exploratory analysis of explicitly supported scientific files. Supports redacted CSV/TSV/JSON profiles; optional NumPy…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| fictiv 88/100 · B | Business MIT | Operates Fictiv (app.fictiv.com), the on-demand manufacturing platform, end to end in the user's browser. Covers uploading CAD parts, configuring…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| flowio 89/100 · B | Science BSD-3-Clause | Reads, inspects, and writes Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| flowkit 87/100 · B | Science MIT | Analyzes flow cytometry data with FlowKit, including spillover compensation, logicle and biexponential transforms, hierarchical gating, GatingML…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| fluidsim 89/100 · B | Science MIT | Plans, configures, inspects, restarts, and analyzes bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| folklore-variant-evidence 77/100 · C | Science MIT | Retrieves ClinGen gene-disease validity assertions for a public gene or disease, and reviews source-linked public evidence and literature for one… |
| generate-image 93/100 · A | Media MIT | Generates or edits images with AI models through the OpenRouter Image API (Gemini, Seedream, Recraft, GPT-Image, Riverflow). Use for photos…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| geniml 81/100 · B | Science MIT | Supports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| genomic-coordinates 80/100 · B | Science MIT | Converts genomic intervals between coordinate conventions, normalises and compares variant representations, and detects assembly or contig-naming…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| genomic-intelligence 80/100 · B | Science MIT | Predicts regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA language…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| geomaster 87/100 · B | Science MIT | Supports geospatial research workflows for remote sensing, vector and raster GIS, spatial statistics, terrain and network analysis, and machine…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| geopandas 79/100 · C | Data MIT | Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O. |
| get-available-resources 87/100 · B | Dev tools MIT | Detects host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| gget 81/100 · B | Science BSD-2-Clause | Queries 20+ bioinformatics resources through CLI/Python. Supports quick lookups of gene info, BLAST/BLAT, viral sequence downloads, PDB/mmCIF…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| ginkgo-cloud-lab 77/100 · C | Science MIT | Guides protocol selection, input preparation, pricing checks, and browser ordering on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio). Applies to… |
| glycoengineering 87/100 · B | Science MIT | Analyzes and engineers protein glycosylation by scanning canonical N-glycosylation sequons, describing S/T-rich regions, checking curated glycan…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| gtars 81/100 · B | Science MIT | Supports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| histolab 85/100 · B | Science Apache-2.0 | Extracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| hugging-science 79/100 · C | Science MIT | Discovers and evaluates scientific datasets, models, methodology posts, and Spaces through the Hugging Science catalog. Used when selecting… |
| hypogenic 93/100 · A | Science MIT | Plans and audits use of ChicagoHAI HypoGeniC/HypoRefine for LLM-assisted hypothesis generation from labeled text datasets. Use for the `hypogenic`…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| hypothesis-generation 79/100 · C | Science MIT | Formulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating… |
| imaging-data-commons 76/100 · C | Science MIT | Queries and downloads public cancer imaging data from NCI Imaging Data Commons. Supports IDC collection discovery, DICOM access, radiology (CT, MR… |
| infographics 89/100 · B | Media MIT | Creates and reviews infographics with Nano Banana 2 via OpenRouter. Use for statistical summaries, timelines, comparisons, processes, and visual…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| labarchive-integration 79/100 · C | Science MIT | Integrates with the official LabArchives ELN REST-like API and Inventory API v1. Supports regional endpoint selection, signed-request construction… |
| lamindb 85/100 · B | Science Apache-2.0 | Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| latchbio-integration 89/100 · B | Science MIT | Builds, registers, debugs, and operates bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| latex-posters 89/100 · B | Science MIT | Creates research posters in LaTeX using beamerposter, tikzposter, or baposter. Use for conference posters, academic presentations, multi-column…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| liteparse 89/100 · B | Documents Apache-2.0 | Local document and PDF parsing that returns spatial text with bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| mageck 87/100 · B | Science MIT | Analyzes pooled CRISPR screen FASTQ reads and guide-count matrices with MAGeCK, validates guide libraries and contrasts, measures replicate and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| marine-carbonate-chemistry 87/100 · B | Science MIT | Solves seawater carbonate chemistry with PyCO2SYS for chemical oceanography, ocean acidification, and marine carbon-cycle research. Use for paired…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| markdown-mermaid-writing 87/100 · B | Writing Apache-2.0 | Writes scientific Markdown documentation and Mermaid diagrams for workflows, relationships, timelines, and schemas. Provides syntax references…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| market-research-reports 87/100 · B | Business MIT | Builds evidence-traceable market research reports and assumption-driven market sizing or forecast scenarios. Use for market definition, industry and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| markitdown 79/100 · C | Documents MIT | Converts heterogeneous documents and selected URIs to Markdown with Microsoft MarkItDown for text analysis, search, and LLM/RAG ingestion. Covers… |
| matchms 93/100 · A | Science Apache-2.0 | Processes, cleans, compares, and searches tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| matlab 89/100 · B | Dev tools MIT | Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows. Use for arrays, tabular/time data, tests, projects, graphics, MAT…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| matplotlib 81/100 · B | Data MIT | Creates and customizes scientific plots with Matplotlib. Used for fine-grained control over plot elements, novel plot types, and scientific…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| medchem 81/100 · B | Science Apache-2.0 | Applies medicinal chemistry filters for compound triage, using drug-likeness rules (Lipinski, Veber, CNS), structural alert catalogs (PAINS, NIBR…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| modal 85/100 · B | DevOps Apache-2.0 | Modal is a serverless cloud platform for running Python on demand, including on-demand GPUs. Use when deploying or serving AI/ML models, running…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| molecular-dynamics 77/100 · C | Science MIT | Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs… |
| molfeat 79/100 · C | Science Apache-2.0 | Featurizes small molecules with Molfeat for QSAR/QSPR, chemical similarity, virtual screening, and molecular ML. Covers ECFP/MACCS fingerprints… |
| ncats-arax 93/100 · A | Science MIT | Queries the NCATS Translator ARAX production API for bounded, typed, provenance-rich one-hop and endpoint-pinned two-hop biomedical knowledge-graph…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| networkx 85/100 · B | Data BSD-3-Clause | Creates, analyzes, and visualizes complex networks and graphs in Python with NetworkX. Use when working with network/graph data structures…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| neurokit2 93/100 · A | Science MIT | Builds and audits reproducible NeuroKit2 research workflows for physiological time-series preprocessing, event/interval analysis, multimodal…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| nextflow 85/100 · B | Science Apache-2.0 | Builds, runs, and debugs Nextflow DSL2 pipelines and nf-core workflows. Use for Nextflow, nf-core, .nf files, nextflow.config…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| nmrglue 87/100 · B | Science MIT | Processes calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| nwb-conversion 87/100 · B | Science MIT | Converts neuroscience acquisition data to Neurodata Without Borders files with NeuroConv and PyNWB, preserves metadata and timebases, checks…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| omero-integration 87/100 · B | Science MIT | Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| ontology-term-resolution 88/100 · B | Science MIT | Resolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also looks…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| open-notebook 87/100 · B | Productivity MIT | Organizes research with the self-hosted Open Notebook alternative to NotebookLM. Supports source ingestion (PDFs, web pages, audio, video, and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| openpiv 89/100 · B | Science BSD-3-Clause | Performs Particle Image Velocimetry (PIV) analysis with OpenPIV. Use when extracting velocity fields from PIV image pairs, analyzing fluid dynamics…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
Show the other 77 skills
| Skill | Category | What it does |
|---|---|---|
| opentrons-integration 93/100 · A | Science MIT | Authors, reviews, migrates, simulates, and troubleshoots official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| optimize-for-gpu 85/100 · B | Dev tools MIT | GPU-accelerates scientific Python on NVIDIA hardware and verifies that the result is correct and faster. Use for CUDA/GPU optimization; CPU-bound…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pacsomatic 87/100 · B | Science MIT | Prepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs. Supports samplesheet…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| paper-lookup 87/100 · B | Science MIT | Searches 18 scholarly APIs for papers, preprints, citations, open-access full text, repository records, and journal OA status, and returns results…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| paperclip 87/100 · B | Science MIT | Searches and reads biomedical papers, FDA/PMDA/EMA documents, clinical trials, and protein records with the GXL Paperclip CLI and Python SDK…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| paperzilla 77/100 · C | Science MIT | Reads projects, searches project feeds, and retrieves recommendations and canonical papers in Paperzilla through the pz CLI. Supports recent… |
| parallel-web 77/100 · C | Productivity MIT | Uses Parallel CLI for web search, URL extraction, deep research, structured data enrichment, entity discovery, and recurring web monitoring. Best… |
| pathml 89/100 · B | Science MIT | Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pathogen-variant-surveillance 89/100 · B | Science MIT | Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pathway-enrichment 86/100 · B | Science MIT | Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| peer-review 79/100 · C | Science MIT | Prepares evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Supports authorized review of scientific… |
| pennylane 87/100 · B | Science Apache-2.0 | Builds and differentiates PennyLane quantum circuits, hybrid PyTorch or JAX models, molecular VQE and QAOA workflows. Use for variational quantum…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| phylogenetics 79/100 · C | Science MIT | Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and… |
| pi-agent 83/100 · B | AI agents MIT | Builds with and operates Pi, the minimal terminal coding harness. Use for installing Pi, configuring providers/models/settings/environment…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| polars 79/100 · C | Data MIT | High-performance DataFrame library for Python ETL, analytics, and pandas migration. It supports expression-based data manipulation with lazy query… |
| polars-bio 87/100 · B | Science Apache-2.0 | Performs genomic interval overlap, nearest, merge, coverage, complement and subtraction on Polars DataFrames, and reads or writes BED, VCF, BCF…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pptx-posters 81/100 · B | Documents MIT | Creates and audits editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. Used when the…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| primekg 87/100 · B | Science MIT | Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| protocolsio-integration 81/100 · B | Science MIT | Reads, validates, and safely exports protocols.io data with current official REST/MCP contracts, or creates non-executing mutation plans. The…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pufferlib 81/100 · B | AI agents MIT | Version-aware guidance for PufferLib reinforcement-learning environments, vectorization, policies, PuffeRL training, evaluation, and safe checkpoint…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pybamm 87/100 · B | Science MIT | Simulates lithium-ion battery charge, discharge and rest experiments with PyBaMM, records parameter-set provenance, checks mesh and solver…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pycalphad 87/100 · B | Science MIT | Computes finite-temperature CALPHAD equilibria, phase fractions, and phase compositions from thermodynamic TDB databases using pycalphad. Use for…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pydeseq2 89/100 · B | Science MIT | Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pydicom 79/100 · C | Science MIT | Reads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression… |
| pyhealth 85/100 · B | Science MIT | Builds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes. Use for PyHealth dataset loading…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pylabrobot 81/100 · B | Science MIT | Develops and reviews PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-device integrations. Supports…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pymatgen 89/100 · B | Science MIT | Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pymc 89/100 · B | Science Apache-2.0 | Builds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pymoo 81/100 · B | Science Apache-2.0 | Solves and validates single-, multi-, and many-objective optimization with pymoo, including NSGA-II, NSGA-III, MOEA/D, constraints, Pareto…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pyopenms 81/100 · B | Science BSD-3-Clause | Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pysam 81/100 · B | Science MIT | Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pytdc 89/100 · B | Science MIT | Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pytorch-lightning 81/100 · B | AI agents Apache-2.0 | Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| pyzotero 87/100 · B | Science MIT | Manages Zotero reference libraries using the pyzotero Python client: retrieves, creates, updates, and deletes items, collections, tags, and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| qiime2-amplicon 79/100 · C | Science MIT | Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer… |
| qiskit 87/100 · B | Science Apache-2.0 | Builds, simulates, transpiles, and executes quantum circuits with Qiskit and IBM Quantum Runtime. Use for Qiskit 2.x circuits and operators, V2…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| qutip 87/100 · B | Science MIT | Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| rdkit 81/100 · B | Science BSD-3-Clause | Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| relion 79/100 · C | Science MIT | Validates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks… |
| research-grants 87/100 · B | Science MIT | Supports research proposal preparation and review for NSF, NIH, DOE, DARPA, and Taiwan NSTC, including opportunity-specific requirements, aims…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| research-lookup 87/100 · B | Science MIT | Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| rowan 85/100 · B | Science Proprietary | Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scanpy 79/100 · C | Science BSD-3-Clause | Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk… |
| scholar-evaluation 89/100 · B | Science MIT | Provides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scientific-brainstorming 87/100 · B | Science MIT | Facilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scientific-critical-thinking 79/100 · C | Science MIT | Evaluates scientific claims and evidence quality. Applies to experimental design validity, biases and confounders, statistical interpretation… |
| scientific-schematics 81/100 · B | Media MIT | Generates scientific diagram drafts using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.7 Flash for quality review. Refines when…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scientific-slides 81/100 · B | Documents MIT | Builds slide decks and presentations for research talks. Used for making PowerPoint slides, conference presentations, seminar talks, research…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scientific-visualization 89/100 · B | Science MIT | Creates and audits truthful, accessible, publication-ready scientific figures with Matplotlib, Seaborn, or Plotly. Use it for figure design…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scikit-bio 79/100 · C | Science BSD-3-Clause | Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA… |
| scikit-learn 89/100 · B | AI agents BSD-3-Clause | Supports machine learning in Python with scikit-learn. Applies when working with supervised learning (classification, regression), unsupervised…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scikit-survival 81/100 · B | Science MIT | Builds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scvelo 87/100 · B | Science BSD-3-Clause | Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| scvi-tools 85/100 · B | Science BSD-3-Clause | Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| seaborn 79/100 · C | Data BSD-3-Clause | Creates Seaborn statistical visualizations with pandas integration for distributions, relationships, categorical comparisons, regression displays… |
| shap 89/100 · B | AI agents MIT | Explain and audit machine-learning predictions with SHAP. Use for selecting SHAP explainers and maskers, computing and validating feature…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| simpy 89/100 · B | Science MIT | Builds, inspects, tests, and analyzes bounded process-based discrete-event simulations with SimPy. Use for event scheduling, resource queues…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| stable-baselines3 81/100 · B | AI agents MIT | Trains and evaluates single-agent reinforcement learning with Stable Baselines3 (PPO, SAC, DQN, TD3, DDPG, A2C), Gymnasium custom environments…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| statistical-analysis 87/100 · B | Science MIT | Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| statistical-power 90/100 · A | Science MIT | Calculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| statsmodels 79/100 · C | Science BSD-3-Clause | Fits and diagnoses Python statistical models including OLS, GLM, discrete and mixed models, ARIMA and SARIMAX. Supports coefficient inference… |
| sympy 87/100 · B | Science MIT | Performs exact symbolic mathematics with SymPy for algebra, calculus, equation solving, symbolic linear algebra, physics, and lambdify or LaTeX code…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| tamarind 83/100 · B | Science MIT | Provides access to a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| tellurium 87/100 · B | Science MIT | Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| tiledbvcf 85/100 · B | Science MIT | Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| timesfm-forecasting 81/100 · B | AI agents Apache-2.0 | Performs zero-shot time-series forecasting with Google's TimesFM, including regular-grid CSV preparation, quantile forecasts, XReg covariates, and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| torch-geometric 89/100 · B | AI agents MIT | Supports PyTorch Geometric (PyG) graph neural networks — node/link/graph classification, message passing (GCN, GAT, GraphSAGE, GIN), heterogeneous…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| torchdrug 87/100 · B | Science Apache-2.0 | Builds and troubleshoots TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraining, molecule generation…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| transformers 87/100 · B | AI agents Apache-2.0 | Hugging Face Transformers for loading Hub models, running pipeline inference, text generation, and Trainer fine-tuning on NLP, vision, audio, and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| umap-learn 77/100 · C | Data BSD-3-Clause | Applies UMAP-learn to nonlinear dimensionality reduction, 2D/3D embeddings, clustering preprocessing, supervised or semi-supervised UMAP, DensMAP… |
| uncertainty-and-units 90/100 · A | Science MIT | Tracks physical units and propagates measurement uncertainty in scientific calculations using pint and uncertainties. Use for unit conversion and…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| usfiscaldata 87/100 · B | Business MIT | Queries the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (Debt to the Penny), Daily…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| vaex 87/100 · B | Data MIT | Processes large tabular scientific datasets with Vaex expressions, filtered views, streamed statistics, binned visualizations, and file conversion…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| venue-templates 79/100 · C | Science MIT | Prepares journal manuscripts, conference papers, research posters, and grant documents using venue-specific formatting guidance and bundled LaTeX… |
| waypoint-bio 79/100 · C | Science MIT | Supports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas… |
| what-if-oracle 83/100 · B | Science CC-BY-NC-SA-4.0 | Supports structured what-if scenario analysis for research planning, experimental contingencies, and scientific project decisions. Explores…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
| zarr-python 87/100 · B | Data MIT | Stores and queries chunked N-D scientific arrays with Zarr-Python 3, including codecs, sharding, S3/GCS storage, and NumPy/Dask/Xarray integration…Get badges  Choose the numeric badge, the letter badge, or both. Each links to this skill’s Suede listing; either valid linked badge can qualify for the feature offer. Markdown HTML |
Where this repository is cited
K-Dense-AI/claude-scientific-skills appears in 2 curated lists: BehiSecc/awesome-claude-skills, travisvn/awesome-claude-skills.